PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G122000.5
Common NameB456_009G122000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 235aa    MW: 26112.4 Da    PI: 4.9518
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G122000.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.4e-172576155
                 AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Gorai.009G122000.5 25 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 76
                        89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.26E-262586No hitNo description
PfamPF008477.2E-132576IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-182586IPR016177DNA-binding domain
PROSITE profilePS5103218.362684IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-182685IPR001471AP2/ERF domain
SMARTSM003803.5E-252690IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MESQSKEEYI GSLRRKSSGF ARGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ  60
EEAAMAYDMA AIEYRGLNAV TNFDLSRYIG WLHPNDQSDS NNSSNPQQNF NGDTNSTPSP  120
NHDTKLEISI QSQTYCTSDT RLDDSNSNGS SSSASSALGH LLKSSKIKEM LDRTSEAACP  180
STPPEPNVPR RSFPDYIQTY FDCQDSSSYT EDDDIIFGDL DSLAIPMFHC ELDG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5897793e-61JX589779.1 Gossypium hirsutum clone NBRI_GE24545 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447650.11e-176PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
RefseqXP_012447649.11e-176PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
SwissprotQ94AN42e-71AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D2TIC61e-177A0A0D2TIC6_G
TrEMBLA0A0D2TNW81e-176A0A0D2TNW8_G
TrEMBLA0A0D2UKM21e-176A0A0D2UKM2_G
STRINGPOPTR_0003s18350.11e-105(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.22e-49ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]